miRBase entry: mze-mir-125b-1

Stem-loop mze-mir-125b-1


Accession
MI0034094
Description
Metriaclima zebra mze-mir-125b-1 precursor miRNA


Sequence

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcacggguuggguucuugggagcu
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure
---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   aggg uucu ggguugggcac uguag  u
ucg    -    u           g     ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000206.1: 2247911-2247972 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-125b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-125b

Accession MIMAT0042323
Description Metriaclima zebra mze-miR-125b mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381