miRBase entry: mze-mir-130-1

Stem-loop mze-mir-130-1


Accession
MI0034103
Description
Metriaclima zebra mze-mir-130-1 precursor miRNA


Sequence

gcccuuuuucuguugcacuacuggacacugagaugagCAGUGCAAUAUUAAAAGGGCA
((((((((..(((((((((.((.............)).)))))))))..)))))))).

Structure
-        uc         a  ggaca 
 gcccuuuu  uguugcacu cu     c
 ||||||||  ||||||||| ||     u
 CGGGAAAA  AUAACGUGA ga     g
A        UU         C  guaga 


Annotation confidence Not enough data
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Genome context
AGTA03000002.1: 7169433-7169490 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-130-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-130

Accession MIMAT0042333
Description Metriaclima zebra mze-miR-130 mature miRNA
Sequence 38 - CAGUGCAAUAUUAAAAGGGCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381