miRBase entry: mze-mir-200b

Stem-loop mze-mir-200b

Accession

MI0034106

Description

Metriaclima zebra mze-mir-200b precursor miRNA

Sequence

caucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    g      c      uauca 
  cauc uuac aggcag auugga     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AGTA03000309.1: 1060253-1060312 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-200b

Accession	MIMAT0042335
Description	Metriaclima zebra mze-miR-200b mature miRNA
Sequence	38 - UAAUACUGCCUGGUAAUGAUGAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381