miRBase entry: mze-let-7c

Stem-loop mze-let-7c

Accession

MI0034107

Description

Metriaclima zebra mze-let-7c precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaacuguacaaccuucuagcuuucc
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ua ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   uuc auc uccaacaugucaa   uug  g  c
ccu   g   u             ---   ag gu

Annotation confidence Not enough data

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Genome context

AGTA03000089.1: 2743438-2743504 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-let-7c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-let-7c

Accession	MIMAT0042336
Description	Metriaclima zebra mze-let-7c mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381