miRBase entry: mze-mir-17

Stem-loop mze-mir-17

Accession

MI0034112

Description

Metriaclima zebra mze-mir-17 precursor miRNA

Sequence

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuacugcagugaaggcacuuucagc
.(((((((((.((.(((((.(((..((....))..)))))))).)).)))))))))....

Structure

---C         A  G     G   uu  g 
    AAAGUGCUU CA UGCAG UAg  uu u
    ||||||||| || ||||| |||  ||  
    uuucacgga gu acguc auc  aa u
cgac         a  g     -   uu  c

Annotation confidence Not enough data

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Genome context

AGTA03000134.1: 1275021-1275080 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mze-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-17

Accession	MIMAT0042340
Description	Metriaclima zebra mze-miR-17 mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381