miRBase entry: mze-mir-200a

Stem-loop mze-mir-200a

Accession

MI0034115

Description

Metriaclima zebra mze-mir-200a precursor miRNA

Sequence

caucuuaccugacagugcuggacuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     u       c    cugu  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u

Annotation confidence Not enough data

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Genome context

AGTA03000309.1: 1060065-1060126 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-200a

Accession	MIMAT0042343
Description	Metriaclima zebra mze-miR-200a mature miRNA
Sequence	40 - UAACACUGUCUGGUAACGAUGUU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381