miRBase entry: mze-mir-27e-1

Stem-loop mze-mir-27e-1

Accession

MI0034122

Description

Metriaclima zebra mze-mir-27e-1 precursor miRNA

Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc

Annotation confidence Not enough data

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Genome context

AGTA03000280.1: 168868-168931 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-27e-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-27e

Accession	MIMAT0042350
Description	Metriaclima zebra mze-miR-27e mature miRNA
Sequence	44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381