miRBase entry: mze-mir-23b

Stem-loop mze-mir-23b

Accession

MI0034126

Description

Metriaclima zebra mze-mir-23b precursor miRNA

Sequence

aggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

-ag           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu

Annotation confidence Not enough data

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Genome context

AGTA03000056.1: 3235823-3235880 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-23b

Accession	MIMAT0042354
Description	Metriaclima zebra mze-miR-23b mature miRNA
Sequence	38 - AUCACAUUGCCAGGGAUUACC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381