miRBase entry: mze-mir-19b-1

Stem-loop mze-mir-19b-1


Accession
MI0034127
Description
Metriaclima zebra mze-mir-19b-1 precursor miRNA


Sequence

aguuuugcugguuugcauucagcuuuaaugguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((((..((((.............)))))))))).))).)))))))).

Structure
-        -   -      uu    uuuaa 
 aguuuugc ugg uuugca  cagc     u
 |||||||| ||| ||||||  ||||     g
 UCAAAACG ACC AAACGU  GUcg     g
G        U   U      --    uuugu 


Annotation confidence Not enough data
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Genome context
AGTA03000036.1: 4187961-4188020 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-19b

Accession MIMAT0042355
Description Metriaclima zebra mze-miR-19b mature miRNA
Sequence 39 - UGUGCAAAUCCAUGCAAAACUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381