miRBase entry: mze-mir-20a-1

Stem-loop mze-mir-20a-1

Accession

MI0034131

Description

Metriaclima zebra mze-mir-20a-1 precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuacugcaauguaagcacuugaagu
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     uucacgaaugu acguc      cacg  
ugaag           a     aucuaa    u

Annotation confidence Not enough data

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Genome context

AGTA03000036.1: 4187837-4187897 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-20a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-20a

Accession	MIMAT0042358
Description	Metriaclima zebra mze-miR-20a mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381