miRBase entry: mze-mir-20a-2

Stem-loop mze-mir-20a-2


Accession
MI0034132
Description
Metriaclima zebra mze-mir-20a-2 precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGucuucuuacuguuuaaauucuacugcaaugugagcacuucaagu
..(((((((((((.(((((.(((...................)))))))).))))))))))).....

Structure
---UA           G     G   ucuucuua 
     AAGUGCUUAUA UGCAG UAG        c
     ||||||||||| ||||| |||        u
     uucacgagugu acguc auc        g
ugaac           a     -   uuaaauuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000134.1: 1275788-1275854 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mze-mir-20a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-20a

Accession MIMAT0042358
Description Metriaclima zebra mze-miR-20a mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381