miRBase entry: mze-mir-193

Stem-loop mze-mir-193


Accession
MI0034175
Description
Metriaclima zebra mze-mir-193 precursor miRNA


Sequence

ugggucuuugcgggcaaggugaguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure
--    u     c    a  g     ccu 
  uggg cuuug gggc ag ugagu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000004.1: 480015-480073 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-193

Accession MIMAT0042391
Description Metriaclima zebra mze-miR-193 mature miRNA
Sequence 38 - AACUGGCCUACAAAGUCCCAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381