miRBase entry: mze-mir-29a-2

Stem-loop mze-mir-29a-2


Accession
MI0034197
Description
Metriaclima zebra mze-mir-29a-2 precursor miRNA


Sequence

accgauuucuuucgguguucagagucugcuucuguuucUAGCACCAUUUGAAAUCGGUUA
(((((((((....((((((.((((...((....))))))))))))....)))))))))..

Structure
--         uuuc      c    ucu  u 
  accgauuuc    gguguu agag   gc u
  |||||||||    |||||| ||||   ||  
  UGGCUAAAG    CCACGA Ucuu   ug c
AU         UUUA      -    ---  u 


Annotation confidence Not enough data
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Genome context
AGTA03000066.1: 815804-815863 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-29a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-29a

Accession MIMAT0042392
Description Metriaclima zebra mze-miR-29a mature miRNA
Sequence 39 - UAGCACCAUUUGAAAUCGGUUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381