miRBase entry: mze-mir-1-2

Stem-loop mze-mir-1-2


Accession
MI0034203
Description
Metriaclima zebra mze-mir-1-2 precursor miRNA


Sequence

acauacuucuuuauguacccauaugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure
--                ac     ugaaca 
  acauacuucuuuaugu  ccaua      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag 


Annotation confidence Not enough data
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Genome context
AGTA03000035.1: 8761539-8761600 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-1-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-1

Accession MIMAT0042359
Description Metriaclima zebra mze-miR-1 mature miRNA
Sequence 41 - UGGAAUGUAAAGAAGUAUGUAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381