miRBase entry: mze-mir-29b-1

Stem-loop mze-mir-29b-1


Accession
MI0034206
Description
Metriaclima zebra mze-mir-29b-1 precursor miRNA


Sequence

cugguuucacguggugguuuagaugugugcugcucuugucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((..((((((..(.......)..)))))))))))).)))))))))....

Structure
----         c      gu      gu ug 
    cugguuuca guggug  uuagau  g  c
    ||||||||| ||||||  ||||||  |  u
    GACUAAAGU UACCAC  GAUcug  c  g
UUGU         U      --      uu uc 


Annotation confidence Not enough data
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Genome context
AGTA03000610.1: 581-643 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-29b

Accession MIMAT0042402
Description Metriaclima zebra mze-miR-29b mature miRNA
Sequence 41 - UAGCACCAUUUGAAAUCAGUGUU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381