miRBase entry: mze-mir-3120

Stem-loop mze-mir-3120


Accession
MI0034260
Description
Metriaclima zebra mze-mir-3120 precursor miRNA


Sequence

cugucugugccugcuguacagguuggaggauauucUGCACAGCAAGUGUAGAUAGGC
((((((((((.((((((.((((.((.....)).)))).)))))).))))))))))..

Structure
--          c      a    u  g 
  cugucugugc ugcugu cagg ug a
  |||||||||| |||||| |||| || g
  GAUAGAUGUG ACGACA GUcu au g
CG          A      C    u  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000234.1: 1311383-1311439 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-3120

Accession MIMAT0042456
Description Metriaclima zebra mze-miR-3120 mature miRNA
Sequence 36 - UGCACAGCAAGUGUAGAUAGGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381