miRBase entry: nbr-mir-183-1

Stem-loop nbr-mir-183-1


Accession
MI0034276
Description
Neolamprologus brichardi nbr-mir-183-1 precursor miRNA


Sequence

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure
--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  auaccg    accau  uaagugac      a
aa      ggau     --        uaucac 


Annotation confidence Not enough data
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Genome context
JH422288.1: 6537145-6537206 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-183-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-183

Accession MIMAT0042467
Description Neolamprologus brichardi nbr-miR-183 mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381