miRBase entry: nbr-mir-199-1

Stem-loop nbr-mir-199-1

Accession

MI0034292

Description

Neolamprologus brichardi nbr-mir-199-1 precursor miRNA

Sequence

cccaguguucagacuaccuguucaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-c       u        c   ---    ga 
  ccagugu cagacuac ugu   ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au

Annotation confidence Not enough data

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Genome context

JH422290.1: 764737-764796 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-199-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-199

Accession	MIMAT0042474
Description	Neolamprologus brichardi nbr-miR-199 mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381