miRBase entry: nbr-mir-100-1

Stem-loop nbr-mir-100-1


Accession
MI0034295
Description
Neolamprologus brichardi nbr-mir-100-1 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGuuaagugacaccacaagcuuguaucuacaggucug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure
--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   ugg caucua guu gaacac    g
guc   a      u   c      caca 


Annotation confidence Not enough data
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Genome context
JH422335.1: 3458751-3458807 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from nbr-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-100

Accession MIMAT0042475
Description Neolamprologus brichardi nbr-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381