miRBase entry: nbr-mir-30a

Stem-loop nbr-mir-30a


Accession
MI0034301
Description
Neolamprologus brichardi nbr-mir-30a precursor miRNA


Sequence

UGUAAACAUCCUUGACUGGAAGCUgagguuuugacagcgagggcuuucagucggauguuugcagc
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure
--           UU           gag   u 
  UGUAAACAUCC  GACUGGAAGCU   guu u
  |||||||||||  |||||||||||   ||| g
  acguuuguagg  cugacuuucgg   cga a
cg           --           gag   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH422285.1: 4404400-4404464 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-30a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-30a

Accession MIMAT0042478
Description Neolamprologus brichardi nbr-miR-30a mature miRNA
Sequence 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381