miRBase entry: nbr-mir-27b

Stem-loop nbr-mir-27b


Accession
MI0034302
Description
Neolamprologus brichardi nbr-mir-27b precursor miRNA


Sequence

agagcuuagcugauuggugaacagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure
--           g    g       u  uug 
  agagcuuagcu auug ugaacag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 


Annotation confidence Not enough data
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Genome context
JH422289.1: 3781496-3781558 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-27b

Accession MIMAT0042479
Description Neolamprologus brichardi nbr-miR-27b mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381