miRBase entry: nbr-mir-25

Stem-loop nbr-mir-25


Accession
MI0034306
Description
Neolamprologus brichardi nbr-mir-25 precursor miRNA


Sequence

aggcggagacuugggcaauugccgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure
--    g     uu g     u   ----   c 
  aggc gagac  g gcaau gcc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 


Annotation confidence Not enough data
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Genome context
JH422530.1: 66949-67008 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-25

Accession MIMAT0042482
Description Neolamprologus brichardi nbr-miR-25 mature miRNA
Sequence 39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381