miRBase entry: nbr-let-7a-3

Stem-loop nbr-let-7a-3

Accession

MI0034308

Description

Neolamprologus brichardi nbr-let-7a-3 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUuggugggugggacugcacccugcucaggugauaacuauacagucuauugccuuccc
.(((((((((((((((((((((...((((((((.......))))))))......)))))))))))))))))))))...

Structure

--U                     ---ugg        ac 
   GAGGUAGUAGGUUGUAUAGUU      uggguggg  u
   |||||||||||||||||||||      ||||||||  g
   uuccguuaucugacauaucaa      acucgucc  c
ccc                     uagugg        ca

Annotation confidence Not enough data

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Genome context

JH422281.1: 12511890-12511967 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-let-7a

Accession	MIMAT0042483
Description	Neolamprologus brichardi nbr-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381