miRBase entry: nbr-let-7a-1

Stem-loop nbr-let-7a-1

Accession

MI0034312

Description

Neolamprologus brichardi nbr-let-7a-1 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUgagaauuacaccccgggagauaacuguacaaccuccuagcuuucc
.(((.(((.((((((((((((((...................)))))))))))))).))).)))...

Structure

--U   G   U              agaauuac 
   GAG UAG AGGUUGUAUAGUUg        a
   ||| ||| ||||||||||||||        c
   uuc auc uccaacaugucaau        c
ccu   g   c              agagggcc

Annotation confidence Not enough data

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Genome context

JH422335.1: 3460055-3460121 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-let-7a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-let-7a

Accession	MIMAT0042483
Description	Neolamprologus brichardi nbr-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381