miRBase entry: nbr-mir-462

Stem-loop nbr-mir-462


Accession
MI0034317
Description
Neolamprologus brichardi nbr-mir-462 precursor miRNA


Sequence

UAACGGAACCCAUAAUGCAGCUGugauucugagccccagcugguuaugggguccguuucc
.((((((.((((((((.((((((.(..........))))))))))))))).))))))...

Structure
--U      A        G      u auuc 
   AACGGA CCCAUAAU CAGCUG g    u
   |||||| |||||||| |||||| |     
   uugccu ggguauug gucgac c    g
ccu      g        -      - ccga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH422281.1: 5151564-5151623 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-462
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-462

Accession MIMAT0042487
Description Neolamprologus brichardi nbr-miR-462 mature miRNA
Sequence 1 - UAACGGAACCCAUAAUGCAGCUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381