miRBase entry: nbr-mir-222-1

Stem-loop nbr-mir-222-1

Accession

MI0034321

Description

Neolamprologus brichardi nbr-mir-222-1 precursor miRNA

Sequence

ugcucaguagucaguguagauccuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--u             -     auc    gg 
   gcucaguagucag uguag   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu

Annotation confidence Not enough data

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Genome context

JH422312.1: 100998-101059 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-222-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-222

Accession	MIMAT0042490
Description	Neolamprologus brichardi nbr-miR-222 mature miRNA
Sequence	39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381