miRBase entry: nbr-mir-221-1

Stem-loop nbr-mir-221-1

Accession

MI0034327

Description

Neolamprologus brichardi nbr-mir-221-1 precursor miRNA

Sequence

accuggcauacaauguagauuucugugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        u         auuu     u  uu 
   accuggca acaauguag    cugug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua

Annotation confidence Not enough data

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Genome context

JH422422.1: 575674-575737 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-221-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-221

Accession	MIMAT0042495
Description	Neolamprologus brichardi nbr-miR-221 mature miRNA
Sequence	42 - AGCUACAUUGUCUGCUGGGUUUC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381