miRBase entry: nbr-mir-125a-2

Stem-loop nbr-mir-125a-2


Accession
MI0034331
Description
Neolamprologus brichardi nbr-mir-125a-2 precursor miRNA


Sequence

UCCCUGAGACCCUUAACCUGUGaggucaaagcaggucacaggugagguccucgggaaca
..((((((..(((((.(((((((............))))))))))))..))))))....

Structure
--UC      AC     A       gguca 
    CCUGAG  CCUUA CCUGUGa     a
    ||||||  ||||| |||||||      
    gggcuc  ggagu ggacacu     a
acaa      cu     -       ggacg 


Annotation confidence Not enough data
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Genome context
JH422307.1: 165174-165232 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-125a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-125a

Accession MIMAT0042498
Description Neolamprologus brichardi nbr-miR-125a mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381