miRBase entry: nbr-let-7d-1

Stem-loop nbr-let-7d-1


Accession
MI0034333
Description
Neolamprologus brichardi nbr-let-7d-1 precursor miRNA


Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure
--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   uuc auc  ccaacaugucaa ag  gua    a
ccu   g   uu            u  ag   cgac 


Annotation confidence Not enough data
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Genome context
JH422307.1: 159119-159188 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-let-7d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-let-7d

Accession MIMAT0042500
Description Neolamprologus brichardi nbr-let-7d mature miRNA
Sequence 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381