miRBase entry: nbr-mir-19b-1

Stem-loop nbr-mir-19b-1

Accession

MI0034339

Description

Neolamprologus brichardi nbr-mir-19b-1 precursor miRNA

Sequence

uuuugcugguuugcauucagcuuuaacgguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((..((((.............)))))))))).))).))))))...

Structure

---      -   -      uu    uuuaa 
   uuuugc ugg uuugca  cagc     c
   |||||| ||| ||||||  ||||     g
   AAAACG ACC AAACGU  GUcg     g
GUC      U   U      --    uuugu

Annotation confidence Not enough data

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Genome context

JH422273.1: 20860047-20860104 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-19b

Accession	MIMAT0042503
Description	Neolamprologus brichardi nbr-miR-19b mature miRNA
Sequence	37 - UGUGCAAAUCCAUGCAAAACUG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381