miRBase entry: nbr-mir-214-1

Stem-loop nbr-mir-214-1

Accession

MI0034348

Description

Neolamprologus brichardi nbr-mir-214-1 precursor miRNA

Sequence

ugccugucuacacuugcugugcagaccuucugcuccuguACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure

--         aca            accu 
  ugccugucu   cuugcugugcag    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    u
AG         CAC            cucg

Annotation confidence Not enough data

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Genome context

JH422290.1: 762118-762178 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-214-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-214

Accession	MIMAT0042510
Description	Neolamprologus brichardi nbr-miR-214 mature miRNA
Sequence	40 - ACAGCAGGCACAGACAGGCAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381