miRBase entry: nbr-mir-200b

Stem-loop nbr-mir-200b

Accession

MI0034357

Description

Neolamprologus brichardi nbr-mir-200b precursor miRNA

Sequence

caucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    g      c      uauca 
  cauc uuac aggcag auugga     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc

Annotation confidence Not enough data

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Genome context

JH422281.1: 3416234-3416293 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-200b

Accession	MIMAT0042517
Description	Neolamprologus brichardi nbr-miR-200b mature miRNA
Sequence	38 - UAAUACUGCCUGGUAAUGAUGAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381