miRBase entry: nbr-let-7e-1

Stem-loop nbr-let-7e-1


Accession
MI0034358
Description
Neolamprologus brichardi nbr-let-7e-1 precursor miRNA


Sequence

UGAGGUAGUAGAUUGAAUAGUUgugggguuuacguccuccuuuugagauaacuauacaaucuacugucuuucc
.((((((((((((((.((((((((((((........)))).......)))))))).))))))))))))))...

Structure
--U              A        -------    uuu 
   GAGGUAGUAGAUUG AUAGUUgu       gggg   a
   |||||||||||||| ||||||||       ||||    
   uucugucaucuaac uaucaaua       ccuc   c
ccu              a        gaguuuu    cug 


Annotation confidence Not enough data
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Genome context
JH422277.1: 3948622-3948694 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-let-7e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-let-7e

Accession MIMAT0042518
Description Neolamprologus brichardi nbr-let-7e mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381