miRBase entry: nbr-mir-19d

Stem-loop nbr-mir-19d

Accession

MI0034360

Description

Neolamprologus brichardi nbr-mir-19d precursor miRNA

Sequence

agcuuugcagggugggcagucagccugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  c      -    gg   gu    c  u  g a 
 ag uuugca gggu  gca  cagc ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a

Annotation confidence Not enough data

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Genome context

JH422530.1: 66759-66824 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-19d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-19d

Accession	MIMAT0042519
Description	Neolamprologus brichardi nbr-miR-19d mature miRNA
Sequence	45 - UGUGCAAACCCAUGCAAAACUG - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381