miRBase entry: nbr-mir-130-1

Stem-loop nbr-mir-130-1


Accession
MI0034363
Description
Neolamprologus brichardi nbr-mir-130-1 precursor miRNA


Sequence

gcccuuuuucuguugcacuacuggacacugagaugagCAGUGCAAUAUUAAAAGGGCA
((((((((..(((((((((.((.............)).)))))))))..)))))))).

Structure
-        uc         a  ggaca 
 gcccuuuu  uguugcacu cu     c
 ||||||||  ||||||||| ||     u
 CGGGAAAA  AUAACGUGA ga     g
A        UU         C  guaga 


Annotation confidence Not enough data
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Genome context
JH422287.1: 3988746-3988803 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-130-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-130

Accession MIMAT0042521
Description Neolamprologus brichardi nbr-miR-130 mature miRNA
Sequence 38 - CAGUGCAAUAUUAAAAGGGCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381