miRBase entry: nbr-mir-19a

Stem-loop nbr-mir-19a

Accession

MI0034369

Description

Neolamprologus brichardi nbr-mir-19a precursor miRNA

Sequence

aguuuugcguaguugcgcugcaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      u  aagaa 
 aguuuugcguag  uugcgc gc     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422286.1: 6064310-6064366 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from nbr-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-19a

Accession	MIMAT0042526
Description	Neolamprologus brichardi nbr-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381