miRBase entry: nbr-mir-27a

Stem-loop nbr-mir-27a

Accession

MI0034375

Description

Neolamprologus brichardi nbr-mir-27a precursor miRNA

Sequence

aggacuuagcucgcuccgugaacaguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--a         u    cc       guu   u a 
   ggacuuagc cgcu  gugaaca   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u

Annotation confidence Not enough data

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Genome context

JH422296.1: 728790-728852 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-27a

Accession	MIMAT0042530
Description	Neolamprologus brichardi nbr-miR-27a mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCCGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381