miRBase entry: nbr-mir-23b

Stem-loop nbr-mir-23b

Accession

MI0034381

Description

Neolamprologus brichardi nbr-mir-23b precursor miRNA

Sequence

aggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

-ag           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu

Annotation confidence Not enough data

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Genome context

JH422289.1: 3781154-3781211 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-23b

Accession	MIMAT0042535
Description	Neolamprologus brichardi nbr-miR-23b mature miRNA
Sequence	38 - AUCACAUUGCCAGGGAUUACC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381