miRBase entry: nbr-mir-20a-1

Stem-loop nbr-mir-20a-1

Accession

MI0034385

Description

Neolamprologus brichardi nbr-mir-20a-1 precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuacugcaauguaagcacuugaagu
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     uucacgaaugu acguc      cacg  
ugaag           a     aucuaa    u

Annotation confidence Not enough data

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Genome context

JH422273.1: 20860170-20860230 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-20a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-20a

Accession	MIMAT0042539
Description	Neolamprologus brichardi nbr-miR-20a mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381