miRBase entry: nbr-mir-27e-1

Stem-loop nbr-mir-27e-1


Accession
MI0034387
Description
Neolamprologus brichardi nbr-mir-27e-1 precursor miRNA


Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure
--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 


Annotation confidence Not enough data
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Genome context
JH422373.1: 1151078-1151141 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-27e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-27e

Accession MIMAT0042540
Description Neolamprologus brichardi nbr-miR-27e mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381