miRBase entry: nbr-mir-20a-2

Stem-loop nbr-mir-20a-2


Accession
MI0034391
Description
Neolamprologus brichardi nbr-mir-20a-2 precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGucuuauuacuguuuaaauucuacugcaaugugagcacuucaagu
..(((((((((((.(((((.(((..(((........)))...)))))))).))))))))))).....

Structure
---UA           G     G   -uc   uua 
     AAGUGCUUAUA UGCAG UAG   uua   c
     ||||||||||| ||||| |||   |||    
     uucacgagugu acguc auc   aau   u
ugaac           a     -   uua   uug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH422286.1: 6064481-6064547 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nbr-mir-20a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-20a

Accession MIMAT0042539
Description Neolamprologus brichardi nbr-miR-20a mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381