miRBase entry: nbr-mir-27d

Stem-loop nbr-mir-27d

Accession

MI0034400

Description

Neolamprologus brichardi nbr-mir-27d precursor miRNA

Sequence

AAGAGCUUAGUUGACUGCUGAACagggagucuugaauauuugUUCACAGUGGCUAAGUUCGUC
..((((((((((.((((.((((((((............))))))))))))))))))))))...

Structure

-AA          G    C        gaguc 
   GAGCUUAGUU ACUG UGAACagg     u
   |||||||||| |||| ||||||||      
   CUUGAAUCGG UGAC ACUUguuu     u
CUG          -    -        auaag

Annotation confidence Not enough data

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Genome context

JH422376.1: 819261-819323 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-27d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-27d-5p

Accession	MIMAT0042547
Description	Neolamprologus brichardi nbr-miR-27d-5p mature miRNA
Sequence	1 - AAGAGCUUAGUUGACUGCUGAAC - 23
Evidence	experimental Illumina [1]

Mature nbr-miR-27d-3p

Accession	MIMAT0042548
Description	Neolamprologus brichardi nbr-miR-27d-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCGUC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381