miRBase entry: nbr-mir-15a

Stem-loop nbr-mir-15a


Accession
MI0034409
Description
Neolamprologus brichardi nbr-mir-15a precursor miRNA


Sequence

UAGCAGCACGGAAUGGUUUGUGgguuauacugagaugcaggccauacugugcugccgca
..(((((((((.((((((((((..(((...)))..)))))))))).)))))))))....

Structure
--UA         A          gg   u 
    GCAGCACGG AUGGUUUGUG  uua  
    ||||||||| ||||||||||  ||| a
    cgucguguc uaccggacgu  agu  
acgc         a          ag   c 


Annotation confidence Not enough data
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Genome context
JH422286.1: 2608850-2608908 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-15a

Accession MIMAT0042553
Description Neolamprologus brichardi nbr-miR-15a mature miRNA
Sequence 1 - UAGCAGCACGGAAUGGUUUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381