miRBase entry: nbr-mir-20b

Stem-loop nbr-mir-20b


Accession
MI0034415
Description
Neolamprologus brichardi nbr-mir-20b precursor miRNA


Sequence

CAAAGUGCUCACAGUGCAGGUAguaaacgcucaucuacugcaguuugugcacuugaggu
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure
---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     uucacg gu u acguc auc    c
uggag      u  u g     -   uacu 


Annotation confidence Not enough data
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Genome context
JH422275.1: 13784286-13784344 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-20b

Accession MIMAT0042558
Description Neolamprologus brichardi nbr-miR-20b mature miRNA
Sequence 1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381