miRBase entry: nbr-mir-24a-1

Stem-loop nbr-mir-24a-1

Accession

MI0034417

Description

Neolamprologus brichardi nbr-mir-24a-1 precursor miRNA

Sequence

ugccuacugagcugauaaucaguccuacagaaucacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((...(((((...........))))).))))))))).))).....

Structure

---ug   a         uaa     ccua 
     ccu cugagcuga   ucagu    c
     ||| |||||||||   |||||    a
     GGA GACUUGACU   GGUca    g
GACAA   C         --C     cuaa

Annotation confidence Not enough data

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Genome context

JH422289.1: 3784943-3785000 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-24a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-24a

Accession	MIMAT0042559
Description	Neolamprologus brichardi nbr-miR-24a mature miRNA
Sequence	37 - UGGCUCAGUUCAGCAGGAACAG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381