miRBase entry: nbr-mir-727

Stem-loop nbr-mir-727

Accession

MI0034424

Description

Neolamprologus brichardi nbr-mir-727 precursor miRNA

Sequence

UCAGUCUUCAAUUCCUCCCAGCccauuacuauggaaacugugaguugaggcgaguugaagacuaaa
..(((((((((((((((.(((.((((....))))...))).))).......))))))))))))...

Structure

-UC            -------   C   --C    u 
   AGUCUUCAAUUC       CUC CAG   ccau a
   ||||||||||||       ||| |||   ||||  
   ucagaaguugag       gag guc   ggua c
aaa            cggaguu   u   aaa    u

Annotation confidence Not enough data

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Genome context

JH422283.1: 10359892-10359957 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-727

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-727

Accession	MIMAT0042566
Description	Neolamprologus brichardi nbr-miR-727 mature miRNA
Sequence	1 - UCAGUCUUCAAUUCCUCCCAGC - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381