miRBase entry: nbr-mir-193

Stem-loop nbr-mir-193

Accession

MI0034431

Description

Neolamprologus brichardi nbr-mir-193 precursor miRNA

Sequence

ugggucuuugcgggcaaggugaguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure

--    u     c    a  g     ccu 
  uggg cuuug gggc ag ugagu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu

Annotation confidence Not enough data

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Genome context

JH422284.1: 8296970-8297028 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-193

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-193

Accession	MIMAT0042573
Description	Neolamprologus brichardi nbr-miR-193 mature miRNA
Sequence	38 - AACUGGCCUACAAAGUCCCAGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381