miRBase entry: nbr-mir-23a-1

Stem-loop nbr-mir-23a-1

Accession

MI0034434

Description

Neolamprologus brichardi nbr-mir-23a-1 precursor miRNA

Sequence

ggaauuccuggcagagugauuuuuuuuaaacuagaggacugaAUCACAUUGCCAGGGAUUUCCA
((((((((((((((.((((((((((((......)))))..))))))).))))))))))))))..

Structure

--              a       --     aa 
  ggaauuccuggcag gugauuu  uuuuu  a
  |||||||||||||| |||||||  |||||   
  CUUUAGGGACCGUU CACUAag  aggag  c
AC              A       uc     au

Annotation confidence Not enough data

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Genome context

JH422293.1: 5861874-5861937 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-23a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-23a

Accession	MIMAT0042542
Description	Neolamprologus brichardi nbr-miR-23a mature miRNA
Sequence	43 - AUCACAUUGCCAGGGAUUUCCA - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381