miRBase entry: nbr-mir-301b-1

Stem-loop nbr-mir-301b-1


Accession
MI0034437
Description
Neolamprologus brichardi nbr-mir-301b-1 precursor miRNA


Sequence

gcuuugacgauguugcacuacuguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure
   u       ---        acu  a   u 
gcu ugacgau   guugcacu   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c 


Annotation confidence Not enough data
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Genome context
JH422323.1: 4212538-4212597 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-301b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-301b

Accession MIMAT0042504
Description Neolamprologus brichardi nbr-miR-301b mature miRNA
Sequence 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381