miRBase entry: nbr-mir-29a

Stem-loop nbr-mir-29a

Accession

MI0034462

Description

Neolamprologus brichardi nbr-mir-29a precursor miRNA

Sequence

cgauuucuuucgguguucagagucugcuucuguuucUAGCACCAUUUGAAAUCGGUUA
(((((((....((((((.((((...((....))))))))))))....)))))))....

Structure

----       uuuc      c    ucu  u 
    cgauuuc    gguguu agag   gc u
    |||||||    |||||| ||||   ||  
    GCUAAAG    CCACGA Ucuu   ug c
AUUG       UUUA      -    ---  u

Annotation confidence Not enough data

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Genome context

JH422304.1: 2583793-2583850 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-29a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-29a

Accession	MIMAT0042584
Description	Neolamprologus brichardi nbr-miR-29a mature miRNA
Sequence	37 - UAGCACCAUUUGAAAUCGGUUA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381